Software and computational pipelines developed within the Rhodes Group:
- Candida auris Pathogenwatch: https://pathogen.watch
- MARDy database and antifungal drug resistance mutation detection: http://www.mardy.net
- Metabarcoding pipeline for MinION sequencing: https://github.com/mycologenomics/AD_PD_microbiome
- Bioinformatics pipeline for whole genome sequencing alignment and variant calling: https://github.com/mycologenomics?tab=repositories
- Bioinformatics pipeline for RNAseq analysis, including differential expression analysis: https://github.com/mycologenomics/RNAseq
- WIGWAMS for detecting co-regulated genes across multiple conditions: https://doi.org/10.1093/bioinformatics/btt728
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